Research Data Leeds Repository

Datasets associated with 'Modelling Network Formation in Folded Protein Hydrogels by Cluster Aggregation Kinetics'

Citation

Cook, Kalila and Head, David and Dougan, Lorna (2023) Datasets associated with 'Modelling Network Formation in Folded Protein Hydrogels by Cluster Aggregation Kinetics'. University of Leeds. [Dataset] https://doi.org/10.5518/1323¹

Dataset description

Datasets containing data associated with the paper “Modelling Network Formation in Folded Protein Hydrogels by Cluster Aggregation Kinetics”. Dataset 1 contains data file outputs per simulation run, Dataset 2 contains finite size test data outputs and Dataset 3 contains pore size data outputs.

Divisions:	Faculty of Engineering and Physical Sciences > School of Physics and Astronomy2
Related resources:	Location Type https://doi.org/10.1039/D3SM00111C3 Publication https://eprints.whiterose.ac.uk/221618/4 Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	05 Apr 2023 14:59
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/10875
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Cook, Kalila https://orcid.org/0009-0008-5534-28136 University of Leeds https://ror.org/024mrxd33 ror Head, David https://orcid.org/0000-0003-0216-67877 University of Leeds https://ror.org/024mrxd33 ror Dougan, Lorna https://orcid.org/0000-0002-2620-58278 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: EPSRC Grant numbers: (EP/P02288X/1) Publication date: 2023 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: d.head@leeds.ac.uk9 Last Modified: 16 Jan 2025 15:41

Files

Documentation

README Cook 2023 Dataset 1 Volume Fractions [25kB] 10 README Cook 2023 Dataset 1 Volume Fractions [25kB] 11 README Cook 2023 Dataset 1 Volume Fractions [25kB] 12 Security: Anyone File name: README_Cook_2023_Dataset1VolumeFractions.docx13 Content type: Documentation Mime-Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 25kB

README Cook 2023 Dataset 2 Finite Size Test Results [24kB] 14 README Cook 2023 Dataset 2 Finite Size Test Results [24kB] 15 README Cook 2023 Dataset 2 Finite Size Test Results [24kB] 16 Security: Anyone File name: README_Cook_2023_Dataset2FiniteSizeTestResults.docx17 Content type: Documentation Mime-Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 24kB

README Cook 2023 Dataset 3 Pore Sizes [24kB] 18 README Cook 2023 Dataset 3 Pore Sizes [24kB] 19 README Cook 2023 Dataset 3 Pore Sizes [24kB] 20 Security: Anyone File name: README_Cook_2023_Dataset3PoreSizes.docx21 Content type: Documentation Mime-Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 24kB

Data

Dataset 1 Volume Fractions [159MB] 22 Dataset 1 Volume Fractions [159MB] 23 Dataset 1 Volume Fractions [159MB] 24 Security: Anyone File name: Dataset1VolumeFractions.zip25 Content type: Data Description: Dataset subfolders with data files for box-counting, cluster sizes, gel point time and position coordinates, position coordinates for initial and updated particle positions, cluster mass distribution, and supercomputer job script output. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 159MB

Dataset 2 Finite Size Test Results [14MB] 26 Dataset 2 Finite Size Test Results [14MB] 27 Dataset 2 Finite Size Test Results [14MB] 28 Security: Anyone File name: Dataset2FiniteSizeTestResults.zip29 Content type: Data Description: FiniteSizeTestResults folder contains subfolders with this repeated data set type but varied system sizes. Each data set contains files for box-counting data, gel point time and position coordinates, and supercomputer job script output. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 14MB

Dataset 3 Pore Sizes [4MB] 30 Dataset 3 Pore Sizes [4MB] 31 Dataset 3 Pore Sizes [4MB] 32 Security: Anyone File name: Dataset3PoreSizes.zip33 Content type: Data Description: Dataset subfolders with the necessary files of supercomputer job script output (containing pore size distribution histograms) and pore snapshot images. Optional files of position coordinates for updated particle positions are also provided. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 4MB

• 1. https://doi.org/10.5518/1323
• 2. https://archive.researchdata.leeds.ac.uk/view/divisions/SPA/
• 3. https://doi.org/10.1039/D3SM00111C
• 4. https://eprints.whiterose.ac.uk/221618/
• 5. https://archive.researchdata.leeds.ac.uk/id/eprint/1087
• 6. https://orcid.org/0009-0008-5534-2813
• 7. https://orcid.org/0000-0003-0216-6787
• 8. https://orcid.org/0000-0002-2620-5827
• 9. mailto:d.head@leeds.ac.uk
• 10. https://archive.researchdata.leeds.ac.uk/1087/4/README_Cook_2023_Dataset1VolumeFractions.docx
• 11. https://archive.researchdata.leeds.ac.uk/1087/4/README_Cook_2023_Dataset1VolumeFractions.docx
• 12. https://archive.researchdata.leeds.ac.uk/1087/4/README_Cook_2023_Dataset1VolumeFractions.docx
• 13. https://archive.researchdata.leeds.ac.uk/1087/4/README_Cook_2023_Dataset1VolumeFractions.docx
• 14. https://archive.researchdata.leeds.ac.uk/1087/5/README_Cook_2023_Dataset2FiniteSizeTestResults.docx
• 15. https://archive.researchdata.leeds.ac.uk/1087/5/README_Cook_2023_Dataset2FiniteSizeTestResults.docx
• 16. https://archive.researchdata.leeds.ac.uk/1087/5/README_Cook_2023_Dataset2FiniteSizeTestResults.docx
• 17. https://archive.researchdata.leeds.ac.uk/1087/5/README_Cook_2023_Dataset2FiniteSizeTestResults.docx
• 18. https://archive.researchdata.leeds.ac.uk/1087/6/README_Cook_2023_Dataset3PoreSizes.docx
• 19. https://archive.researchdata.leeds.ac.uk/1087/6/README_Cook_2023_Dataset3PoreSizes.docx
• 20. https://archive.researchdata.leeds.ac.uk/1087/6/README_Cook_2023_Dataset3PoreSizes.docx
• 21. https://archive.researchdata.leeds.ac.uk/1087/6/README_Cook_2023_Dataset3PoreSizes.docx
• 22. https://archive.researchdata.leeds.ac.uk/1087/1/Dataset1VolumeFractions.zip
• 23. https://archive.researchdata.leeds.ac.uk/1087/1/Dataset1VolumeFractions.zip
• 24. https://archive.researchdata.leeds.ac.uk/1087/1/Dataset1VolumeFractions.zip
• 25. https://archive.researchdata.leeds.ac.uk/1087/1/Dataset1VolumeFractions.zip
• 26. https://archive.researchdata.leeds.ac.uk/1087/2/Dataset2FiniteSizeTestResults.zip
• 27. https://archive.researchdata.leeds.ac.uk/1087/2/Dataset2FiniteSizeTestResults.zip
• 28. https://archive.researchdata.leeds.ac.uk/1087/2/Dataset2FiniteSizeTestResults.zip
• 29. https://archive.researchdata.leeds.ac.uk/1087/2/Dataset2FiniteSizeTestResults.zip
• 30. https://archive.researchdata.leeds.ac.uk/1087/3/Dataset3PoreSizes.zip
• 31. https://archive.researchdata.leeds.ac.uk/1087/3/Dataset3PoreSizes.zip
• 32. https://archive.researchdata.leeds.ac.uk/1087/3/Dataset3PoreSizes.zip
• 33. https://archive.researchdata.leeds.ac.uk/1087/3/Dataset3PoreSizes.zip