Research Data Leeds Repository

Dataset associated with the publication 'Cooperative RecA Clustering: The Key to Efficient Homology Searching'

Citation

Lee, Andrew J. and Sharma, Rajan and Hobbs, Jamie and Wälti, Christoph (2017) Dataset associated with the publication 'Cooperative RecA Clustering: The Key to Efficient Homology Searching'. University of Leeds. [Dataset] https://doi.org/10.5518/243¹

Dataset description

Raw data of the experimental work reported in the publication entitled 'Cooperative RecA Clustering: The Key to Efficient Homology Searching’.

Keywords:	dna genome nucleoproteins recombination, genetic sequence homology dna, double-stranded molecule
Subjects:	C000 - Biological sciences > C700 - Molecular biology, biophysics & biochemistry2
Divisions:	Faculty of Engineering and Physical Sciences > School of Electronic and Electrical Engineering3
Related resources:	Location Type https://doi.org/10.1093/nar/gkx7694 Publication https://eprints.whiterose.ac.uk/120719/5 Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	08 Sep 2017 10:44
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/2466
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Lee, Andrew J. https://orcid.org/0000-0003-2268-46457 University of Leeds https://ror.org/024mrxd33 ror University of Sheffield https://ror.org/05krs5044 ror Sharma, Rajan https://orcid.org/0000-0003-1928-216X8 University of Leeds https://ror.org/024mrxd33 ror Hobbs, Jamie https://orcid.org/0000-0002-5872-14049 University of Sheffield https://ror.org/05krs5044 ror Wälti, Christoph https://orcid.org/0000-0001-9286-535910 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: EPSRC, BBSRC Grant numbers: EP/J500124, BB/L014904/1 Publication date: 2017 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: c.walti@leeds.ac.uk11 Last Modified: 12 Aug 2024 13:50

Files

Documentation

readme.txt [427B] 12 readme.txt [427B] 13 readme.txt [427B] 14 Security: Anyone File name: readme.txt15 Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 427B

Data

60nt Hetero 37oC [78MB] 16 60nt Hetero 37oC [78MB] 17 60nt Hetero 37oC [78MB] 18 Security: Anyone File name: 60nt_Heterologous_37oC.zip19 Content type: Data Description: AFM Image: Temporal Snapshot of Heterologous 60 nt Nucleoprotein filament interaction with 890 bp dsDNA at 37˚C. Used to derive interaction statistics for figure 3. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 78MB

60nt Hom 22oC [47MB] 20 60nt Hom 22oC [47MB] 21 60nt Hom 22oC [47MB] 22 Security: Anyone File name: 60nt_Homologous_22oC.zip23 Content type: Data Description: AFM Image: Temporal Snapshot of Homologous 60 nt Nucleoprotein filament interaction with 890 bp dsDNA at 22˚C. Used to derive interaction statistics for figure 3. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 47MB

60nt Hom 37oC [68MB] 24 60nt Hom 37oC [68MB] 25 60nt Hom 37oC [68MB] 26 Security: Anyone File name: 60nt_Homologous_37oC.zip27 Content type: Data Description: AFM Image: Temporal Snapshot of Homologous 60 nt Nucleoprotein filament interaction with 890 bp dsDNA at 37˚C. Used to derive interaction statistics for figure 3. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 68MB

60nt Hom 4oC [6MB] 28 60nt Hom 4oC [6MB] 29 60nt Hom 4oC [6MB] 30 Security: Anyone File name: 60nt_Homologous_4oC.zip31 Content type: Data Description: AFM Image: Temporal Snapshot of Homologous 60 nt Nucleoprotein filament interaction with 890 bp dsDNA at 4˚C. Used to derive interaction statistics for figure S1. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 6MB

890 bp Nucleoprotein Filaments [7MB] 32 890 bp Nucleoprotein Filaments [7MB] 33 890 bp Nucleoprotein Filaments [7MB] 34 Security: Anyone File name: 890_bp_Nucleoprotein_Filaments.zip35 Content type: Data Description: AFM Image: Fully and partially formed Nucleoprotein filaments on 890 bp dsDNA. Used for figure S6. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 7MB

High Speed AFM Cluster Interaction [24MB] 36 High Speed AFM Cluster Interaction [24MB] 37 High Speed AFM Cluster Interaction [24MB] 38 Security: Anyone File name: High_Speed_AFM_Cluster_Interaction.zip39 Content type: Data Description: High Speed AFM Image: Part of an image sequence depicting the interaction of a RecA Nucleoprotein filament cluster with a 3.5 kbp dsDNA molecule. Used for figure 4 and Movie S1. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 24MB

• 1. https://doi.org/10.5518/243
• 2. https://archive.researchdata.leeds.ac.uk/view/subjects/C700.html
• 3. https://archive.researchdata.leeds.ac.uk/view/divisions/SEEE/
• 4. https://doi.org/10.1093/nar/gkx769
• 5. https://eprints.whiterose.ac.uk/120719/
• 6. https://archive.researchdata.leeds.ac.uk/id/eprint/246
• 7. https://orcid.org/0000-0003-2268-4645
• 8. https://orcid.org/0000-0003-1928-216X
• 9. https://orcid.org/0000-0002-5872-1404
• 10. https://orcid.org/0000-0001-9286-5359
• 11. mailto:c.walti@leeds.ac.uk
• 12. https://archive.researchdata.leeds.ac.uk/246/7/readme.txt
• 13. https://archive.researchdata.leeds.ac.uk/246/7/readme.txt
• 14. https://archive.researchdata.leeds.ac.uk/246/7/readme.txt
• 15. https://archive.researchdata.leeds.ac.uk/246/7/readme.txt
• 16. https://archive.researchdata.leeds.ac.uk/246/1/60nt_Heterologous_37oC.zip
• 17. https://archive.researchdata.leeds.ac.uk/246/1/60nt_Heterologous_37oC.zip
• 18. https://archive.researchdata.leeds.ac.uk/246/1/60nt_Heterologous_37oC.zip
• 19. https://archive.researchdata.leeds.ac.uk/246/1/60nt_Heterologous_37oC.zip
• 20. https://archive.researchdata.leeds.ac.uk/246/2/60nt_Homologous_22oC.zip
• 21. https://archive.researchdata.leeds.ac.uk/246/2/60nt_Homologous_22oC.zip
• 22. https://archive.researchdata.leeds.ac.uk/246/2/60nt_Homologous_22oC.zip
• 23. https://archive.researchdata.leeds.ac.uk/246/2/60nt_Homologous_22oC.zip
• 24. https://archive.researchdata.leeds.ac.uk/246/3/60nt_Homologous_37oC.zip
• 25. https://archive.researchdata.leeds.ac.uk/246/3/60nt_Homologous_37oC.zip
• 26. https://archive.researchdata.leeds.ac.uk/246/3/60nt_Homologous_37oC.zip
• 27. https://archive.researchdata.leeds.ac.uk/246/3/60nt_Homologous_37oC.zip
• 28. https://archive.researchdata.leeds.ac.uk/246/4/60nt_Homologous_4oC.zip
• 29. https://archive.researchdata.leeds.ac.uk/246/4/60nt_Homologous_4oC.zip
• 30. https://archive.researchdata.leeds.ac.uk/246/4/60nt_Homologous_4oC.zip
• 31. https://archive.researchdata.leeds.ac.uk/246/4/60nt_Homologous_4oC.zip
• 32. https://archive.researchdata.leeds.ac.uk/246/5/890_bp_Nucleoprotein_Filaments.zip
• 33. https://archive.researchdata.leeds.ac.uk/246/5/890_bp_Nucleoprotein_Filaments.zip
• 34. https://archive.researchdata.leeds.ac.uk/246/5/890_bp_Nucleoprotein_Filaments.zip
• 35. https://archive.researchdata.leeds.ac.uk/246/5/890_bp_Nucleoprotein_Filaments.zip
• 36. https://archive.researchdata.leeds.ac.uk/246/6/High_Speed_AFM_Cluster_Interaction.zip
• 37. https://archive.researchdata.leeds.ac.uk/246/6/High_Speed_AFM_Cluster_Interaction.zip
• 38. https://archive.researchdata.leeds.ac.uk/246/6/High_Speed_AFM_Cluster_Interaction.zip
• 39. https://archive.researchdata.leeds.ac.uk/246/6/High_Speed_AFM_Cluster_Interaction.zip