Research Data Leeds Repository

Citation

Machin, Jonathan and Radford, Sheena E. (2025) Data for "OmpA specifically modulates the activity of OMP enzymes in the crowded bacterial outer membrane". University of Leeds. [Dataset] https://doi.org/10.5518/1667

Dataset description

Source data files containing fluorescence folding traces, raw activity data for all assays, gel images, DLS and Alphafold prediction files

Keywords:	Outer membrane proteins (OMPs), OMP islands, bacterial outer membrane, membrane proteins
Divisions:	Faculty of Biological Sciences > School of Molecular and Cellular Biology
Related resources:	Location Type https://doi.org/10.1016/j.jmb.2025.169346 Publication https://eprints.whiterose.ac.uk/id/eprint/229036/ Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	12 Aug 2025 20:05
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/1442
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Machin, Jonathan https://orcid.org/0000-0002-1920-149X University of Leeds https://ror.org/024mrxd33 ror Radford, Sheena E. https://orcid.org/0000-0002-3079-8039 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: Wellcome Trust, MRC, Royal Society Publication date: 2025 Resource language: English Metadata language: English Publisher: University of Leeds Last Modified: 15 Aug 2025 08:04

Files

Documentation

README_SUMMARY.txt [1kB] README_SUMMARY.txt [1kB] README_SUMMARY.txt [1kB] Security: Anyone File name: README_SUMMARY.txt Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1kB

Data

figure_data.zip [556MB] figure_data.zip [556MB] figure_data.zip [556MB] Security: Anyone File name: figure_data.zip Content type: Data Description: Raw data underlying each figure in the main text Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 556MB

supplementry_figure_data.zip [364MB] supplementry_figure_data.zip [364MB] supplementry_figure_data.zip [364MB] Security: Anyone File name: supplementry_figure_data.zip Content type: Data Description: Raw data underlying each figure in the supplementary Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 364MB

ompla_activity_data.zip [104kB] ompla_activity_data.zip [104kB] ompla_activity_data.zip [104kB] Security: Anyone File name: ompla_activity_data.zip Content type: Data Description: Raw activity traces for OmpLA activity (fluorescence) Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 104kB

ompt_activity_data.zip [785kB] ompt_activity_data.zip [785kB] ompt_activity_data.zip [785kB] Security: Anyone File name: ompt_activity_data.zip Content type: Data Description: Raw activity traces for OmpT activity (fluorescence) Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 785kB

pagp_activity_data.zip [99kB] pagp_activity_data.zip [99kB] pagp_activity_data.zip [99kB] Security: Anyone File name: pagp_activity_data.zip Content type: Data Description: Raw activity traces for PagP activity (absorbance) Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 99kB

alphafold_models.zip [8GB] alphafold_models.zip [8GB] alphafold_models.zip [8GB] Security: Anyone File name: alphafold_models.zip Content type: Data Description: Alphafold2 predictions for all complexes described in the associated paper (models and metadata (pkl) files) Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 8GB

tsx_dimers.zip [654MB] tsx_dimers.zip [654MB] tsx_dimers.zip [654MB] Security: Anyone File name: tsx_dimers.zip Content type: Data Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 654MB