Research Data Leeds Repository

Citation

Hernández-Navarro, Lluís and Asker, Matthew and Mobilia, Mauro (2023) Data set of the manuscript: Coupled environmental and demographic fluctuations shape the evolution of cooperative antimicrobial resistance. University of Leeds. [Dataset] https://doi.org/10.5518/1360

Dataset description

Dataset for 'Coupled environmental and demographic fluctuations shape the evolution of cooperative antimicrobial resistance'. A full description of the data, methods, and interpretation may be found in the related publication. Computational data: raw results from stochastic simulations of our full model and of the effective Moran model at fixed total population. Scripts: codes to run the simulations (in Python), as well as codes to generate each of the 4+1 main and supplementary figures (in Matlab) from the computational data.

Additional information:	Data made available under Cc-By; scripts under an MIT licence
Keywords:	Eco-evolutionary dynamics, Fluctuations, Coexistence, Antimicrobial resistance, Cooperation, Environmental variability
Subjects:	G000 - Mathematical sciences > G100 - Mathematics > G120 - Applied mathematics C000 - Biological sciences > C700 - Molecular biology, biophysics & biochemistry > C770 - Biophysical science
Divisions:	Faculty of Engineering and Physical Sciences > School of Mathematics > Department of Applied Mathematics
Related resources:	Location Type https://doi.org/10.1101/2023.07.06.547929 Publication https://doi.org/10.1098/rsif.2023.0393 Publication https://eprints.whiterose.ac.uk/204859/ Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	06 Jul 2023 14:36
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/1128
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Hernández-Navarro, Lluís https://orcid.org/0000-0002-7272-7597 University of Leeds https://ror.org/024mrxd33 Asker, Matthew https://orcid.org/0009-0003-5548-5535 University of Leeds https://ror.org/024mrxd33 Mobilia, Mauro https://orcid.org/0000-0002-1424-567X University of Leeds https://ror.org/024mrxd33 Type of data: Dataset Research funders: EPSRC Grant numbers: EP/V014439/1, EP/T517860/1 Publication date: 2023 Resource language: English Metadata language: English Research project title: DMS-EPSRC Eco-Evolutionary Dynamics of Fluctuating Populations, PhD scholarship Publisher: University of Leeds Contact email: L.Hernandez-Navarro@leeds.ac.uk Last Modified: 05 Jun 2024 11:41

Files

Documentation

README_Hernandez-Navarro-etal_2023.txt [4kB] README_Hernandez-Navarro-etal_2023.txt [4kB] README_Hernandez-Navarro-etal_2023.txt [4kB] Security: Anyone File name: README_Hernandez-Navarro-etal_2023.txt Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 4kB

MIT_licence.txt [1kB] MIT_licence.txt [1kB] MIT_licence.txt [1kB] Security: Anyone File name: MIT_licence.txt Content type: Documentation Mime-Type: text/plain License: MIT License File size: 1kB

Data

SimulationData.zip [520MB] SimulationData.zip [520MB] SimulationData.zip [520MB] Security: Anyone File name: SimulationData.zip Content type: Data Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 520MB

Fig1Data.mat [1MB] Fig1Data.mat [1MB] Fig1Data.mat [1MB] Security: Anyone File name: Fig1Data.mat Content type: Data License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1MB

Program

distribution.py [955B] distribution.py [955B] distribution.py [955B] Security: Anyone File name: distribution.py Content type: Program License: MIT License File size: 955B

FinalFigure1.m [5kB] FinalFigure1.m [5kB] FinalFigure1.m [5kB] Security: Anyone File name: FinalFigure1.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 5kB

FinalFigure2.m [12kB] FinalFigure2.m [12kB] FinalFigure2.m [12kB] Security: Anyone File name: FinalFigure2.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 12kB

FinalFigure3.m [7kB] FinalFigure3.m [7kB] FinalFigure3.m [7kB] Security: Anyone File name: FinalFigure3.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 7kB

FinalFigure4.m [16kB] FinalFigure4.m [16kB] FinalFigure4.m [16kB] Security: Anyone File name: FinalFigure4.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 16kB

FinalFigureS1.m [8kB] FinalFigureS1.m [8kB] FinalFigureS1.m [8kB] Security: Anyone File name: FinalFigureS1.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 8kB

fixation_properties.py [1kB] fixation_properties.py [1kB] fixation_properties.py [1kB] Security: Anyone File name: fixation_properties.py Content type: Program License: MIT License File size: 1kB

heatmap.py [1kB] heatmap.py [1kB] heatmap.py [1kB] Security: Anyone File name: heatmap.py Content type: Program License: MIT License File size: 1kB

next_reaction_method.py [22kB] next_reaction_method.py [22kB] next_reaction_method.py [22kB] Security: Anyone File name: next_reaction_method.py Content type: Program License: MIT License File size: 22kB

trajectories.py [898B] trajectories.py [898B] trajectories.py [898B] Security: Anyone File name: trajectories.py Content type: Program License: MIT License File size: 898B