Research Data Leeds Repository

Intermediate structural hierarchy in biological networks modulates the fractal dimension and force distribution of percolating clusters - Simulation Data

Hanson, Benjamin and Dougan, Lorna (2021) Intermediate structural hierarchy in biological networks modulates the fractal dimension and force distribution of percolating clusters - Simulation Data. University of Leeds. [Dataset] https://doi.org/10.5518/996

Dataset description

We computationally investigated the effect of intermediate (polymeric) nanoscale structure on the formation of protein hydrogels, and found that pre-assembled intermediate structure provides a novel structural coordinate for the hierarchical modulation of macroscopic network properties, as well as furthering our understanding of the general dynamics of network formation. This is the computational dataset comprising our results

Subjects:	F000 - Physical sciences > F300 - Physics > F340 - Mathematical & theoretical physics > F343 - Computational physics C000 - Biological sciences > C700 - Molecular biology, biophysics & biochemistry
Divisions:	Faculty of Engineering and Physical Sciences
Related resources:	Location Type https://doi.org/10.1021/acs.biomac.1c00751 Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	20 Sep 2021 20:08
URI:	http://archive.researchdata.leeds.ac.uk/id/eprint/892
Additional details Additional details Creators: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Hanson, Benjamin https://orcid.org/0000-0002-6079-4506 University Of Leeds https://ror.org/024mrxd33 ROR Dougan, Lorna https://orcid.org/0000-0002-2620-5827 University Of Leeds https://ror.org/024mrxd33 ROR Type of data: Dataset Research funders: EPSRC Grant numbers: (EP/P02288X/1) Publication date: 2021 Resource language: English Publisher: University of Leeds Contact Email Address: l.dougan@leeds.ac.uk Last Modified: 23 Sep 2021 10:03

Files

Documentation

README.txt [5kB] README.txt [5kB] README.txt [5kB] Visible to: Anyone File name: README.txt Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 5kB

Data

Single Polymer Simulation Input [54kB] Single Polymer Simulation Input [54kB] Single Polymer Simulation Input [54kB] Visible to: Anyone File name: SinglePolymer_input.tar.gz Content type: Data Description: Input files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 54kB

Single Polymer Simulation Output [2MB] Single Polymer Simulation Output [2MB] Single Polymer Simulation Output [2MB] Visible to: Anyone File name: SinglePolymer_output.tar.gz Content type: Data Description: Output files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 2MB

Single Polymer Simulation Initialise [1kB] Single Polymer Simulation Initialise [1kB] Single Polymer Simulation Initialise [1kB] Visible to: Anyone File name: SinglePolymer_initialise.tar.gz Content type: Data Description: Initialise files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1kB

Single Polymer Simulation Analysis [3kB] Single Polymer Simulation Analysis [3kB] Single Polymer Simulation Analysis [3kB] Visible to: Anyone File name: SinglePolymer_analysis.tar.gz Content type: Data Description: Analysis files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 3kB

Single Polymer Simulation Results [1MB] Single Polymer Simulation Results [1MB] Single Polymer Simulation Results [1MB] Visible to: Anyone File name: SinglePolymer_results.tar.gz Content type: Data Description: Results files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1MB

Polyprotein Network Simulation Input [34MB] Polyprotein Network Simulation Input [34MB] Polyprotein Network Simulation Input [34MB] Visible to: Anyone File name: PolyproteinNetwork_input.tar.gz Content type: Data Description: Input files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 34MB

Polyprotein Network Simulation Output [19GB] Polyprotein Network Simulation Output [19GB] Polyprotein Network Simulation Output [19GB] Visible to: Anyone File name: PolyproteinNetwork_output.tar.gz Content type: Data Description: Output files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 19GB

Polyprotein Network Simulation Initialise [3kB] Polyprotein Network Simulation Initialise [3kB] Polyprotein Network Simulation Initialise [3kB] Visible to: Anyone File name: PolyproteinNetwork_initialise.tar.gz Content type: Data Description: Initialise files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 3kB

Polyprotein Network Simulation Analysis [9kB] Polyprotein Network Simulation Analysis [9kB] Polyprotein Network Simulation Analysis [9kB] Visible to: Anyone File name: PolyproteinNetwork_analysis.tar.gz Content type: Data Description: Analysis files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 9kB

Polyprotein Network Simulation Results [161MB] Polyprotein Network Simulation Results [161MB] Polyprotein Network Simulation Results [161MB] Visible to: Anyone File name: PolyproteinNetwork_results.tar.gz Content type: Data Description: Results files for BioNet Mime-Type: application/x-gzip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 161MB