Research Data Leeds Repository

Total RNA sequencing of Ewing sarcoma cell lines and 3D spheroids

Citation

Burchill, Susan and Roundhill, Elizabeth (2023) Total RNA sequencing of Ewing sarcoma cell lines and 3D spheroids. University of Leeds. [Dataset] https://doi.org/10.5518/1210¹

Dataset description

Total RNA seqeuncing FASTQ.gzip files

Additional information:	This dataset is held in the Restricted Access Data Repository, RADAR. To request access, please click the link under ‘Related resources’. You will be prompted to complete a request form including your intended use of the dataset. You will then receive an initial response to your request within 10 working days.
Keywords:	Ewing sarcoma, RNA sequencing
Subjects:	C000 - Biological sciences > C400 - Genetics > C440 - Molecular genetics > C441 - Transcriptomics2
Divisions:	Faculty of Medicine and Health > School of Medicine3
Related resources:	Location Type https://doi.org/10.3390/cancers150307694 Publication https://eprints.whiterose.ac.uk/id/eprint/223479/5 Publication https://radar.researchdata.leeds.ac.uk/76/6 Dataset
License:	Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
Date deposited:	12 Jun 2023 20:06
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/11197
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Burchill, Susan https://orcid.org/0000-0002-1034-37238 University of Leeds https://ror.org/024mrxd33 ror Roundhill, Elizabeth https://orcid.org/0000-0002-0508-36489 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: Ewing Sarcoma Research Trust, Bone Cancer Research Trust, FP7 grant "EURO EWING Consortium", University of Leeds PhD studentship Grant numbers: 602856 Publication date: 2023 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: s.a.burchill@leeds.ac.uk10 Last Modified: 20 Jun 2025 17:12

Files

Documentation

readme [2kB] 11 readme [2kB] 12 readme [2kB] 13 Security: Anyone File name: readme-Roundhill-1210.txt14 Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 2kB

Data

SKNMC_1_1.fastq.gz [2GB] 15 SKNMC_1_1.fastq.gz [2GB] 16 SKNMC_1_1.fastq.gz [2GB] 17 Security: Anyone File name: SKNMC_1_1.fastq.gz18 Content type: Data Description: SK-N-MC cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 2GB

SKNMC_2_1.fastq.gz [2GB] 19 SKNMC_2_1.fastq.gz [2GB] 20 SKNMC_2_1.fastq.gz [2GB] 21 Security: Anyone File name: SKNMC_2_1.fastq.gz22 Content type: Data Description: SK-N-MC cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 2GB

SKNMC_3Dspheroid_1_1.fastq.gz [2GB] 23 SKNMC_3Dspheroid_1_1.fastq.gz [2GB] 24 SKNMC_3Dspheroid_1_1.fastq.gz [2GB] 25 Security: Anyone File name: SKNMC_3Dspheroid_1_1.fastq.gz26 Content type: Data Description: SK-N-MC 3D spheroid Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 2GB

SKNMC_3Dspheroid_2_1.fastq.gz [2GB] 27 SKNMC_3Dspheroid_2_1.fastq.gz [2GB] 28 SKNMC_3Dspheroid_2_1.fastq.gz [2GB] 29 Security: Anyone File name: SKNMC_3Dspheroid_2_1.fastq.gz30 Content type: Data Description: SK-N-MC 3D spheroid Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 2GB

TTC 466_1_1.fastq.gz [5GB] 31 TTC 466_1_1.fastq.gz [5GB] 32 TTC 466_1_1.fastq.gz [5GB] 33 Security: Anyone File name: TTC_466_1_1.fastq.gz34 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 5GB

TTC 466_1_2.fastq.gz [5GB] 35 TTC 466_1_2.fastq.gz [5GB] 36 TTC 466_1_2.fastq.gz [5GB] 37 Security: Anyone File name: TTC_466_1_2.fastq.gz38 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 5GB

TTC 466_1_3.fastq.gz [4GB] 39 TTC 466_1_3.fastq.gz [4GB] 40 TTC 466_1_3.fastq.gz [4GB] 41 Security: Anyone File name: TTC_466_1_3.fastq.gz42 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 4GB

TTC 466_1_4.fastq.gz [5GB] 43 TTC 466_1_4.fastq.gz [5GB] 44 TTC 466_1_4.fastq.gz [5GB] 45 Security: Anyone File name: TTC_466_1_4.fastq.gz46 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 5GB

TTC 466_2_1.fastq.gz [5GB] 47 TTC 466_2_1.fastq.gz [5GB] 48 TTC 466_2_1.fastq.gz [5GB] 49 Security: Anyone File name: TTC_466_2_1.fastq.gz50 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 5GB

TTC 466_2_2.fastq.gz [5GB] 51 TTC 466_2_2.fastq.gz [5GB] 52 TTC 466_2_2.fastq.gz [5GB] 53 Security: Anyone File name: TTC_466_2_2.fastq.gz54 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 5GB

TTC 466_2_3.fastq.gz [4GB] 55 TTC 466_2_3.fastq.gz [4GB] 56 TTC 466_2_3.fastq.gz [4GB] 57 Security: Anyone File name: TTC_466_2_3.fastq.gz58 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 4GB

TTC 466_2_4.fastq.gz [5GB] 59 TTC 466_2_4.fastq.gz [5GB] 60 TTC 466_2_4.fastq.gz [5GB] 61 Security: Anyone File name: TTC_466_2_4.fastq.gz62 Content type: Data Description: TTC 466 cell line Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 5GB

TTC 466_3Dspheroid_1_1.fastq.gz [1GB] 63 TTC 466_3Dspheroid_1_1.fastq.gz [1GB] 64 TTC 466_3Dspheroid_1_1.fastq.gz [1GB] 65 Security: Anyone File name: TTC_466_3Dspheroid_1_1.fastq.gz66 Content type: Data Description: TTC 466 3D spheroid Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 1GB

TTC 466_3Dspheroid_2_1.fastq.gz [1GB] 67 TTC 466_3Dspheroid_2_1.fastq.gz [1GB] 68 TTC 466_3Dspheroid_2_1.fastq.gz [1GB] 69 Security: Anyone File name: TTC_466_3Dspheroid_2_1.fastq.gz70 Content type: Data Description: TTC 466 3D spheroid Mime-Type: application/x-gzip License: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) File size: 1GB

• 1. https://doi.org/10.5518/1210
• 2. https://archive.researchdata.leeds.ac.uk/view/subjects/C441.html
• 3. https://archive.researchdata.leeds.ac.uk/view/divisions/SOM/
• 4. https://doi.org/10.3390/cancers15030769
• 5. https://eprints.whiterose.ac.uk/id/eprint/223479/
• 6. https://radar.researchdata.leeds.ac.uk/76/
• 7. https://archive.researchdata.leeds.ac.uk/id/eprint/1119
• 8. https://orcid.org/0000-0002-1034-3723
• 9. https://orcid.org/0000-0002-0508-3648
• 10. mailto:s.a.burchill@leeds.ac.uk
• 11. https://archive.researchdata.leeds.ac.uk/1119/15/readme-Roundhill-1210.txt
• 12. https://archive.researchdata.leeds.ac.uk/1119/15/readme-Roundhill-1210.txt
• 13. https://archive.researchdata.leeds.ac.uk/1119/15/readme-Roundhill-1210.txt
• 14. https://archive.researchdata.leeds.ac.uk/1119/15/readme-Roundhill-1210.txt
• 15. https://archive.researchdata.leeds.ac.uk/1119/1/SKNMC_1_1.fastq.gz
• 16. https://archive.researchdata.leeds.ac.uk/1119/1/SKNMC_1_1.fastq.gz
• 17. https://archive.researchdata.leeds.ac.uk/1119/1/SKNMC_1_1.fastq.gz
• 18. https://archive.researchdata.leeds.ac.uk/1119/1/SKNMC_1_1.fastq.gz
• 19. https://archive.researchdata.leeds.ac.uk/1119/2/SKNMC_2_1.fastq.gz
• 20. https://archive.researchdata.leeds.ac.uk/1119/2/SKNMC_2_1.fastq.gz
• 21. https://archive.researchdata.leeds.ac.uk/1119/2/SKNMC_2_1.fastq.gz
• 22. https://archive.researchdata.leeds.ac.uk/1119/2/SKNMC_2_1.fastq.gz
• 23. https://archive.researchdata.leeds.ac.uk/1119/3/SKNMC_3Dspheroid_1_1.fastq.gz
• 24. https://archive.researchdata.leeds.ac.uk/1119/3/SKNMC_3Dspheroid_1_1.fastq.gz
• 25. https://archive.researchdata.leeds.ac.uk/1119/3/SKNMC_3Dspheroid_1_1.fastq.gz
• 26. https://archive.researchdata.leeds.ac.uk/1119/3/SKNMC_3Dspheroid_1_1.fastq.gz
• 27. https://archive.researchdata.leeds.ac.uk/1119/4/SKNMC_3Dspheroid_2_1.fastq.gz
• 28. https://archive.researchdata.leeds.ac.uk/1119/4/SKNMC_3Dspheroid_2_1.fastq.gz
• 29. https://archive.researchdata.leeds.ac.uk/1119/4/SKNMC_3Dspheroid_2_1.fastq.gz
• 30. https://archive.researchdata.leeds.ac.uk/1119/4/SKNMC_3Dspheroid_2_1.fastq.gz
• 31. https://archive.researchdata.leeds.ac.uk/1119/5/TTC_466_1_1.fastq.gz
• 32. https://archive.researchdata.leeds.ac.uk/1119/5/TTC_466_1_1.fastq.gz
• 33. https://archive.researchdata.leeds.ac.uk/1119/5/TTC_466_1_1.fastq.gz
• 34. https://archive.researchdata.leeds.ac.uk/1119/5/TTC_466_1_1.fastq.gz
• 35. https://archive.researchdata.leeds.ac.uk/1119/6/TTC_466_1_2.fastq.gz
• 36. https://archive.researchdata.leeds.ac.uk/1119/6/TTC_466_1_2.fastq.gz
• 37. https://archive.researchdata.leeds.ac.uk/1119/6/TTC_466_1_2.fastq.gz
• 38. https://archive.researchdata.leeds.ac.uk/1119/6/TTC_466_1_2.fastq.gz
• 39. https://archive.researchdata.leeds.ac.uk/1119/7/TTC_466_1_3.fastq.gz
• 40. https://archive.researchdata.leeds.ac.uk/1119/7/TTC_466_1_3.fastq.gz
• 41. https://archive.researchdata.leeds.ac.uk/1119/7/TTC_466_1_3.fastq.gz
• 42. https://archive.researchdata.leeds.ac.uk/1119/7/TTC_466_1_3.fastq.gz
• 43. https://archive.researchdata.leeds.ac.uk/1119/8/TTC_466_1_4.fastq.gz
• 44. https://archive.researchdata.leeds.ac.uk/1119/8/TTC_466_1_4.fastq.gz
• 45. https://archive.researchdata.leeds.ac.uk/1119/8/TTC_466_1_4.fastq.gz
• 46. https://archive.researchdata.leeds.ac.uk/1119/8/TTC_466_1_4.fastq.gz
• 47. https://archive.researchdata.leeds.ac.uk/1119/9/TTC_466_2_1.fastq.gz
• 48. https://archive.researchdata.leeds.ac.uk/1119/9/TTC_466_2_1.fastq.gz
• 49. https://archive.researchdata.leeds.ac.uk/1119/9/TTC_466_2_1.fastq.gz
• 50. https://archive.researchdata.leeds.ac.uk/1119/9/TTC_466_2_1.fastq.gz
• 51. https://archive.researchdata.leeds.ac.uk/1119/10/TTC_466_2_2.fastq.gz
• 52. https://archive.researchdata.leeds.ac.uk/1119/10/TTC_466_2_2.fastq.gz
• 53. https://archive.researchdata.leeds.ac.uk/1119/10/TTC_466_2_2.fastq.gz
• 54. https://archive.researchdata.leeds.ac.uk/1119/10/TTC_466_2_2.fastq.gz
• 55. https://archive.researchdata.leeds.ac.uk/1119/11/TTC_466_2_3.fastq.gz
• 56. https://archive.researchdata.leeds.ac.uk/1119/11/TTC_466_2_3.fastq.gz
• 57. https://archive.researchdata.leeds.ac.uk/1119/11/TTC_466_2_3.fastq.gz
• 58. https://archive.researchdata.leeds.ac.uk/1119/11/TTC_466_2_3.fastq.gz
• 59. https://archive.researchdata.leeds.ac.uk/1119/12/TTC_466_2_4.fastq.gz
• 60. https://archive.researchdata.leeds.ac.uk/1119/12/TTC_466_2_4.fastq.gz
• 61. https://archive.researchdata.leeds.ac.uk/1119/12/TTC_466_2_4.fastq.gz
• 62. https://archive.researchdata.leeds.ac.uk/1119/12/TTC_466_2_4.fastq.gz
• 63. https://archive.researchdata.leeds.ac.uk/1119/13/TTC_466_3Dspheroid_1_1.fastq.gz
• 64. https://archive.researchdata.leeds.ac.uk/1119/13/TTC_466_3Dspheroid_1_1.fastq.gz
• 65. https://archive.researchdata.leeds.ac.uk/1119/13/TTC_466_3Dspheroid_1_1.fastq.gz
• 66. https://archive.researchdata.leeds.ac.uk/1119/13/TTC_466_3Dspheroid_1_1.fastq.gz
• 67. https://archive.researchdata.leeds.ac.uk/1119/14/TTC_466_3Dspheroid_2_1.fastq.gz
• 68. https://archive.researchdata.leeds.ac.uk/1119/14/TTC_466_3Dspheroid_2_1.fastq.gz
• 69. https://archive.researchdata.leeds.ac.uk/1119/14/TTC_466_3Dspheroid_2_1.fastq.gz
• 70. https://archive.researchdata.leeds.ac.uk/1119/14/TTC_466_3Dspheroid_2_1.fastq.gz