Research Data Leeds Repository

Citation

Kirk, Philip and Amsbury, Sam and German, Liam and Gaudioso-Pedraza, Rocio and Benitez-Alfonso, Yoselin (2022) Raw data for "A comparative meta-proteomic pipeline for the identification of plasmodesmata proteins and regulatory conditions in diverse plant species". University of Leeds. [Dataset] https://doi.org/10.5518/1155

Dataset description

This repository contains the raw data for the publication listed in the title. Abstract: A major route for cell-to-cell signaling in plants is mediated by cell wall-embedded pores termed plasmodesmata forming the symplasm. Plasmodesmata regulate plant development and responses to the environment however, our understanding of what factors or regulatory cues affect their structure and permeability is still limited. In this paper, a meta-analysis was carried out for the identification of conditions affecting plasmodesmata transport and for the in silico prediction of plasmodesmata proteins in species for which the plasmodesmata proteome has not been experimentally determined.

Keywords:	plasmodesmata, comparative proteomics, phenotyping, confocal images, expression data
Divisions:	Faculty of Biological Sciences > Centre for Plant Sciences Faculty of Biological Sciences > School of Biology Faculty of Biological Sciences > School of Molecular and Cellular Biology
Related resources:	Location Type https://doi.org/10.1186/s12915-022-01331-1 Publication https://eprints.whiterose.ac.uk/187936/ Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	17 May 2022 15:29
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/963
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Kirk, Philip https://orcid.org/0000-0003-3733-9916 University of Leeds https://ror.org/024mrxd33 ror Amsbury, Sam https://orcid.org/0000-0002-2767-9768 University of Sheffield https://ror.org/05krs5044 ror German, Liam https://orcid.org/0000-0001-8002-1001 University of Leeds https://ror.org/024mrxd33 ror Gaudioso-Pedraza, Rocio https://orcid.org/0000-0003-1323-102X University of Leeds https://ror.org/024mrxd33 ror Benitez-Alfonso, Yoselin https://orcid.org/0000-0001-9779-0413 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: UKRI, Leverhulme Trust, University of Leeds, BBSRC, BBSRC Grant numbers: MR/T04263X/1, RPG-2016-136, BB/M011151/1, BB/T009691/1 Publication date: 2022 Resource language: English Metadata language: English Research project title: Future Leader Fellowship, Gosden Studentship, DTP, Discovery Fellowship Publisher: University of Leeds Contact email: Y.Benitez-Alfonso@leeds.ac.uk Last Modified: 19 Jun 2024 08:11

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Data

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