Research Data Leeds Repository

Citation

Padgett, Thomas (2020) The fishPy tool: An individual-based model to predict upstream movements of brown trout (Salmo trutta). University of Leeds. [Dataset] https://doi.org/10.5518/861

Dataset description

The fishPy tool is a three-dimensional, spatially-continuous, individual-based model of fish responses to hydraulic stimuli during upstream migration through ecohydraulic environments.

Subjects:	C000 - Biological sciences > C300 - Zoology > C350 - Marine zoology H000 - Engineering > H100 - General engineering > H140 - Mechanics > H141 - Fluid mechanics
Divisions:	Faculty of Engineering and Physical Sciences > Centre for Computational Fluid Dynamics
Related resources:	Location Type https://etheses.whiterose.ac.uk/28307/ Ethesis
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	13 Oct 2020 07:58
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/754
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Padgett, Thomas https://orcid.org/0000-0001-8396-2931 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Publication date: 2020 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: ed10tep@leeds.ac.uk Last Modified: 08 Dec 2025 10:01

Files

Documentation

readme.txt [918B] readme.txt [918B] readme.txt [918B] Security: Anyone File name: readme.txt Content type: Documentation Description: Read me file (instructions) Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 918B

mit_licence.txt [1kB] mit_licence.txt [1kB] mit_licence.txt [1kB] Security: Anyone File name: mit_licence.txt Content type: Documentation Mime-Type: text/plain License: MIT License File size: 1kB

Data

domains.zip [57MB] domains.zip [57MB] domains.zip [57MB] Security: Anyone File name: domains.zip Content type: Data Description: Compressed folder containing example domain files to be used as inputs for the fishPy tool. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 57MB

outputs.zip [22kB] outputs.zip [22kB] outputs.zip [22kB] Security: Anyone File name: outputs.zip Content type: Data Description: Compressed folder containing example output files from the fishPy tool. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 22kB

OF2fishPy.zip [445MB] OF2fishPy.zip [445MB] OF2fishPy.zip [445MB] Security: Anyone File name: OF2fishPy.zip Content type: Data Description: Compressed folder containing scripts required to convert an OpenFOAM CFD output into a fishPy input file. Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 445MB

Program

The fishPy tool [81kB] The fishPy tool [81kB] The fishPy tool [81kB] Security: Anyone File name: fishPy.py Content type: Program Description: The fishPy tool is a three-dimensional, spatially-continuous, individual-based model of fish responses to hydraulic stimuli during upstream migration through ecohydraulic environments. File size: 81kB