Research Data Leeds Repository

Data to support ‘Simulation of protein pulling dynamics on second time scale with boxed molecular dynamics’

Mapplebeck, Sarah and Shalashilin, Dmitry (2021) Data to support ‘Simulation of protein pulling dynamics on second time scale with boxed molecular dynamics’. University of Leeds. [Dataset] https://doi.org/10.5518/1040

Dataset description

This data set contains the all the figure and supporting data relating to the paper ‘Simulation of protein pulling dynamics on second time scale with boxed molecular dynamics’ (doi: 10.1063/5.0059321). Each data set, titled by the PMF used to generate it, is split into subdirectories for the velocities the code was run at (in Angstrom/ns) each of which contain the population, free energy and force outputs for the simulation. The simulations can be created again using the files in the code folder and each arrays2.cm contained in each PFM folder in which it is contained. Compile with ifort compiler for fortran 77.

Keywords: AFM BXD proteins, Afm pulling of proteins
Divisions: Faculty of Mathematics and Physical Sciences > School of Chemistry
Related resources:
LocationType
https://doi.org/10.1063/5.0059321Publication
https://eprints.whiterose.ac.uk/177658/Publication
License: Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited: 07 Oct 2021 08:09
URI: http://archive.researchdata.leeds.ac.uk/id/eprint/894

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