Research Data Leeds Repository

In situ protein unfolding defines network architecture and mechanics of protein hydrogels - Results and Analysis

Citation

Hughes, Matt D. G. and Hanson, Benjamin S. (2021) In situ protein unfolding defines network architecture and mechanics of protein hydrogels - Results and Analysis. University of Leeds. [Dataset] https://doi.org/10.5518/940¹

Dataset description

A dataset containing the raw data and analysis results of a simulation series designed to investigate the structural characteristics of (BSA) protein-based hydrogels

Subjects:	C000 - Biological sciences > C100 - Biology2 F000 - Physical sciences > F300 - Physics3
Divisions:	Faculty of Engineering and Physical Sciences > School of Physics and Astronomy4
Related resources:	Location Type https://doi.org/10.1021/acsnano.1c003535 Publication https://eprints.whiterose.ac.uk/176526/6 Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	23 Jun 2021 20:07
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/8537
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Hughes, Matt D. G. https://orcid.org/0000-0001-5838-79398 University of Leeds https://ror.org/024mrxd33 ror Hanson, Benjamin S. https://orcid.org/0000-0002-6079-45069 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: EPSRC Grant numbers: EP/P02288X/1 Publication date: 2021 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: B.S.Hanson@leeds.ac.uk10 Last Modified: 03 Sep 2024 07:54

Files

Documentation

README [2kB] 11 README [2kB] 12 README [2kB] 13 Security: Anyone File name: README14 Content type: Documentation Description: A document describing the simulation and analysis protocols performed, to enable reproducability License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 2kB

Data

output [5GB] 15 output [5GB] 16 output [5GB] 17 Security: Anyone File name: output.tar.bz218 Content type: Data Description: A folder containing the simulation output files Mime-Type: application/x-bzip2 License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 5GB

results [335kB] 19 results [335kB] 20 results [335kB] 21 Security: Anyone File name: results.tar.bz222 Content type: Data Description: A folder containing graphs and data from the analysis Mime-Type: application/x-bzip2 License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 335kB

raw experimental data [533kB] 23 raw experimental data [533kB] 24 raw experimental data [533kB] 25 Security: Anyone File name: RawExperimentalData_ACSNano_Hughes2021.xlsx26 Content type: Data Mime-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 533kB

Program

initialise [2kB] 27 initialise [2kB] 28 initialise [2kB] 29 Security: Anyone File name: initialise.tar.bz230 Content type: Program Description: A folder containing python scripts to build and run the simulations Mime-Type: application/x-bzip2 License: MIT License File size: 2kB

input [6MB] 31 input [6MB] 32 input [6MB] 33 Security: Anyone File name: input.tar.bz234 Content type: Program Description: A folder containing the simulation input scripts (XML scripts) Mime-Type: application/x-bzip2 License: MIT License File size: 6MB

analysis [10kB] 35 analysis [10kB] 36 analysis [10kB] 37 Security: Anyone File name: analysis.tar.bz238 Content type: Program Description: A folder containing python scripts for automated data analysis Mime-Type: application/x-bzip2 License: MIT License File size: 10kB

• 1. https://doi.org/10.5518/940
• 2. https://archive.researchdata.leeds.ac.uk/view/subjects/C100.html
• 3. https://archive.researchdata.leeds.ac.uk/view/subjects/F300.html
• 4. https://archive.researchdata.leeds.ac.uk/view/divisions/SPA/
• 5. https://doi.org/10.1021/acsnano.1c00353
• 6. https://eprints.whiterose.ac.uk/176526/
• 7. https://archive.researchdata.leeds.ac.uk/id/eprint/853
• 8. https://orcid.org/0000-0001-5838-7939
• 9. https://orcid.org/0000-0002-6079-4506
• 10. mailto:B.S.Hanson@leeds.ac.uk
• 11. https://archive.researchdata.leeds.ac.uk/853/1/README
• 12. https://archive.researchdata.leeds.ac.uk/853/1/README
• 13. https://archive.researchdata.leeds.ac.uk/853/1/README
• 14. https://archive.researchdata.leeds.ac.uk/853/1/README
• 15. https://archive.researchdata.leeds.ac.uk/853/4/output.tar.bz2
• 16. https://archive.researchdata.leeds.ac.uk/853/4/output.tar.bz2
• 17. https://archive.researchdata.leeds.ac.uk/853/4/output.tar.bz2
• 18. https://archive.researchdata.leeds.ac.uk/853/4/output.tar.bz2
• 19. https://archive.researchdata.leeds.ac.uk/853/6/results.tar.bz2
• 20. https://archive.researchdata.leeds.ac.uk/853/6/results.tar.bz2
• 21. https://archive.researchdata.leeds.ac.uk/853/6/results.tar.bz2
• 22. https://archive.researchdata.leeds.ac.uk/853/6/results.tar.bz2
• 23. https://archive.researchdata.leeds.ac.uk/853/7/RawExperimentalData_ACSNano_Hughes2021.xlsx
• 24. https://archive.researchdata.leeds.ac.uk/853/7/RawExperimentalData_ACSNano_Hughes2021.xlsx
• 25. https://archive.researchdata.leeds.ac.uk/853/7/RawExperimentalData_ACSNano_Hughes2021.xlsx
• 26. https://archive.researchdata.leeds.ac.uk/853/7/RawExperimentalData_ACSNano_Hughes2021.xlsx
• 27. https://archive.researchdata.leeds.ac.uk/853/2/initialise.tar.bz2
• 28. https://archive.researchdata.leeds.ac.uk/853/2/initialise.tar.bz2
• 29. https://archive.researchdata.leeds.ac.uk/853/2/initialise.tar.bz2
• 30. https://archive.researchdata.leeds.ac.uk/853/2/initialise.tar.bz2
• 31. https://archive.researchdata.leeds.ac.uk/853/3/input.tar.bz2
• 32. https://archive.researchdata.leeds.ac.uk/853/3/input.tar.bz2
• 33. https://archive.researchdata.leeds.ac.uk/853/3/input.tar.bz2
• 34. https://archive.researchdata.leeds.ac.uk/853/3/input.tar.bz2
• 35. https://archive.researchdata.leeds.ac.uk/853/5/analysis.tar.bz2
• 36. https://archive.researchdata.leeds.ac.uk/853/5/analysis.tar.bz2
• 37. https://archive.researchdata.leeds.ac.uk/853/5/analysis.tar.bz2
• 38. https://archive.researchdata.leeds.ac.uk/853/5/analysis.tar.bz2