General information:
=============

Analysis and comparison of FFEA with all-atom molecular dynamics
Solernou, Albert and Hanson, Benjamin S. and Richardson, Robin A and Welch, Robert and Harris, Sarah A. and Read, Daniel J. and Harlen, Oliver G. (2017) 


File formats:
=============

 Binary files
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   * .png - images in Portable Network Graphics format.
   * .pcz - pyPCA compressed format.
   * .map - CCP4 electron density map file from the EMDB.
   * .pdf - figures in Portable Document Format.
   * .mp4 - h264 video files with mp4 container.

 Text files
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   * .pdb - Protein Data Bank files.
   * .vol - NETGEN 4 tetrahedra mesh file.
   * .obj - Wavefront .obj geometry data file.
   * .o* - Log file.
   * .e* - Log file.
   * .sh - Shell script for runnning the simulation/
   * .stl - 3D mesh file format.
   * comp.txt - PCA dot product matrix file generated by PyPCA

   FFEA 2.4 input files 
     * .ffea - input script.
     * .top - topology file.
     * .mat - material file.
     * .node - node file.
     * .surf - surface file.
     * .stokes - stokes file.
     * .lj - lennard-jones file.
     * .vdw - van der Waals file.
     * .pin - pin node file.

   FFEA 2.4 output files
     * .ftj - trajectory file.
     * .fm -  measurement file.
     * .fcp - checkpoint file.
     * .map - FFEA kinetic conformation mapping file (sparse)

FFEA is free software that can be found in: 
  https://bitbucket.org/ffea/ffea
and documentation hosted at:
  https://ffea.readthedocs.io