Research Data Leeds Repository

Citation

Dewhurst, Emily, Davis Birch, William, Buckley, Anthony M, Culmer, Peter R, Kapur, Nikil and Moura, Ines B (2026) Designing Structures to Support Biofilm Growth in a Colonic In Vitro Model - collated data. University of Leeds. [Dataset] https://doi.org/10.5518/1829

Dataset description

Scaffolds were designed to support biofilm growth within an in vitro gastrointestinal model. This dataset contains the data used during a study to compare two different scaffold designs. The data includes both qPCR and taxonomic data which were used in the associated publication.

Additional information:	Data subject to review. DOI pending.
Keywords:	Biofilm, gastrointestinal, gut model
Subjects:	H000 - Engineering > H300 - Mechanical engineering
Divisions:	Faculty of Engineering and Physical Sciences > School of Mechanical Engineering
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	09 Mar 2026 15:46
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/1528
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Dewhurst, Emily https://orcid.org/0009-0009-9936-5854 University of Leeds https://ror.org/024mrxd33 ror Davis Birch, William https://orcid.org/0000-0002-3352-1721 University of Leeds https://ror.org/024mrxd33 ror Buckley, Anthony M https://orcid.org/0000-0002-2790-0717 University of Leeds https://ror.org/024mrxd33 ror Culmer, Peter R https://orcid.org/0000-0003-2867-0420 University of Leeds https://ror.org/024mrxd33 ror Kapur, Nikil https://orcid.org/0000-0003-1041-8390 University of Leeds https://ror.org/024mrxd33 ror Moura, Ines B https://orcid.org/0000-0002-3019-7196 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: EPSRC Grant numbers: 95545289 Publication date: 2026 Resource language: English Research project title: Building microbial cities: engineering mucosal biofilm nurseries for Antimicrobial Resistant (AMR) research Publisher: University of Leeds Contact email: mnemd@leeds.ac.uk Last Modified: 09 Mar 2026 15:49

Files

Documentation

README_Dewhurst_2026.txt [5kB] README_Dewhurst_2026.txt [5kB] README_Dewhurst_2026.txt [5kB] Security: Anyone File name: README_Dewhurst_2026.txt Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 5kB

Data

qPCR_data.xlsx [43kB] qPCR_data.xlsx [43kB] qPCR_data.xlsx [43kB] Security: Anyone File name: qPCR_data.xlsx Content type: Data Description: This file contains data from real-time quantitative PCR of samples for 10 different populations, separated by experiment. All values reported are in log10copies/uL. Mime-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 43kB

16S_rRNA_data.xlsx [57kB] 16S_rRNA_data.xlsx [57kB] 16S_rRNA_data.xlsx [57kB] Security: Anyone File name: 16S_rRNA_data.xlsx Content type: Data Description: This file contains taxonomic data from both experiments. Data is reported at a family level; only families with registered reads are included. Taxonomic data is reported as the relative abundance (%). Mime-Type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 57kB