Research Data Leeds Repository

Citation

Hernández-Navarro, Lluís and Asker, Matthew and Mobilia, Mauro (2023) Dataset for 'Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating volume and size'. University of Leeds. [Dataset] https://doi.org/10.5518/1462

Dataset description

Dataset for 'Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating size and volume'. A full description of the data, methods, and interpretation may be found in the related publication. Computational data: raw results from stochastic simulations and theoretical predictions of our full model, in both the static and dynamic environment cases. Code: exact stochastic algorithm for simulating full model and .mat files for reading data.

Subjects:	G000 - Mathematical sciences > G100 - Mathematics > G120 - Applied mathematics
Divisions:	Faculty of Engineering and Physical Sciences > School of Mathematics > Department of Applied Mathematics
Related resources:	Location Type https://arxiv.org/html/2312.14826v1 Publication https://doi.org/10.1088/1751-8121/ad4ad6 Publication https://eprints.whiterose.ac.uk/213447/ Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	20 Dec 2023 15:11
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/1209
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Hernández-Navarro, Lluís https://orcid.org/0000-0002-7272-7597 University of Leeds https://ror.org/024mrxd33 ror Asker, Matthew https://orcid.org/0009-0003-5548-5535 University of Leeds https://ror.org/024mrxd33 ror Mobilia, Mauro https://orcid.org/0000-0002-1424-567X University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: EPSRC Grant numbers: EP/T517860/1, EP/V014439/1 Publication date: 2023 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: mmmwa@leeds.ac.uk Last Modified: 02 Dec 2024 11:50

Files

Documentation

README_Hernandez-Navarro_Asker_Mobilia_2023.txt [5kB] README_Hernandez-Navarro_Asker_Mobilia_2023.txt [5kB] README_Hernandez-Navarro_Asker_Mobilia_2023.txt [5kB] Security: Anyone File name: README_Hernandez-Navarro_Asker_Mobilia_2023.txt Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 5kB

Data

All data and program files as a single zip [663MB] All data and program files as a single zip [663MB] All data and program files as a single zip [663MB] Security: Anyone File name: all_data.zip Content type: Data Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 663MB

Fig2TheoryData_200to25.mat [1MB] Fig2TheoryData_200to25.mat [1MB] Fig2TheoryData_200to25.mat [1MB] Security: Anyone File name: Fig2TheoryData_200to25.mat Content type: Data License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1MB

Fig4and5TheoryData_K_100_1000.mat [1MB] Fig4and5TheoryData_K_100_1000.mat [1MB] Fig4and5TheoryData_K_100_1000.mat [1MB] Security: Anyone File name: Fig4and5TheoryData_K_100_1000.mat Content type: Data License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1MB

SimulationData.zip [660MB] SimulationData.zip [660MB] SimulationData.zip [660MB] Security: Anyone File name: SimulationData.zip Content type: Data Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 660MB

Program

FinalFigure1.m [6kB] FinalFigure1.m [6kB] FinalFigure1.m [6kB] Security: Anyone File name: FinalFigure1.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 6kB

FinalFigure2.m [16kB] FinalFigure2.m [16kB] FinalFigure2.m [16kB] Security: Anyone File name: FinalFigure2.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 16kB

FinalFigure3.m [17kB] FinalFigure3.m [17kB] FinalFigure3.m [17kB] Security: Anyone File name: FinalFigure3.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 17kB

FinalFigure4.m [42kB] FinalFigure4.m [42kB] FinalFigure4.m [42kB] Security: Anyone File name: FinalFigure4.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 42kB

FinalFigure5.m [39kB] FinalFigure5.m [39kB] FinalFigure5.m [39kB] Security: Anyone File name: FinalFigure5.m Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 39kB

fixation_properties.py [1kB] fixation_properties.py [1kB] fixation_properties.py [1kB] Security: Anyone File name: fixation_properties.py Content type: Program License: MIT License File size: 1kB

heatmap.py [1kB] heatmap.py [1kB] heatmap.py [1kB] Security: Anyone File name: heatmap.py Content type: Program License: MIT License File size: 1kB

next_reaction_method.py [22kB] next_reaction_method.py [22kB] next_reaction_method.py [22kB] Security: Anyone File name: next_reaction_method.py Content type: Program License: MIT License File size: 22kB

trajectories.py [984B] trajectories.py [984B] trajectories.py [984B] Security: Anyone File name: trajectories.py Content type: Program License: MIT License File size: 984B