Research Data Leeds Repository

Dataset for 'Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating volume and size'

Citation

Hernández-Navarro, Lluís and Asker, Matthew and Mobilia, Mauro (2023) Dataset for 'Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating volume and size'. University of Leeds. [Dataset] https://doi.org/10.5518/1462¹

Dataset description

Dataset for 'Eco-evolutionary dynamics of cooperative antimicrobial resistance in a population of fluctuating size and volume'. A full description of the data, methods, and interpretation may be found in the related publication. Computational data: raw results from stochastic simulations and theoretical predictions of our full model, in both the static and dynamic environment cases. Code: exact stochastic algorithm for simulating full model and .mat files for reading data.

Subjects:	G000 - Mathematical sciences > G100 - Mathematics > G120 - Applied mathematics2
Divisions:	Faculty of Engineering and Physical Sciences > School of Mathematics > Department of Applied Mathematics3
Related resources:	Location Type https://arxiv.org/html/2312.14826v14 Publication https://doi.org/10.1088/1751-8121/ad4ad65 Publication https://eprints.whiterose.ac.uk/213447/6 Publication
License:	Creative Commons Attribution 4.0 International (CC BY 4.0)
Date deposited:	20 Dec 2023 15:11
URI:	https://archive.researchdata.leeds.ac.uk/id/eprint/12097
Additional details Additional details Creators or authors: Creators ORCID Other ID Email Primary affiliation Primary affiliation ID Primary affiliation ID type Secondary affiliation Secondary affiliation ID Secondary affiliation ID type Hernández-Navarro, Lluís https://orcid.org/0000-0002-7272-75978 University of Leeds https://ror.org/024mrxd33 ror Asker, Matthew https://orcid.org/0009-0003-5548-55359 University of Leeds https://ror.org/024mrxd33 ror Mobilia, Mauro https://orcid.org/0000-0002-1424-567X10 University of Leeds https://ror.org/024mrxd33 ror Type of data: Dataset Research funders: EPSRC Grant numbers: EP/T517860/1, EP/V014439/1 Publication date: 2023 Resource language: English Metadata language: English Publisher: University of Leeds Contact email: mmmwa@leeds.ac.uk11 Last Modified: 02 Dec 2024 11:50

Files

Documentation

README_Hernandez-Navarro_Asker_Mobilia_2023.txt [5kB] 12 README_Hernandez-Navarro_Asker_Mobilia_2023.txt [5kB] 13 README_Hernandez-Navarro_Asker_Mobilia_2023.txt [5kB] 14 Security: Anyone File name: README_Hernandez-Navarro_Asker_Mobilia_2023.txt15 Content type: Documentation Mime-Type: text/plain License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 5kB

Data

All data and program files as a single zip [663MB] 16 All data and program files as a single zip [663MB] 17 All data and program files as a single zip [663MB] 18 Security: Anyone File name: all_data.zip19 Content type: Data Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 663MB

Fig2TheoryData_200to25.mat [1MB] 20 Fig2TheoryData_200to25.mat [1MB] 21 Fig2TheoryData_200to25.mat [1MB] 22 Security: Anyone File name: Fig2TheoryData_200to25.mat23 Content type: Data License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1MB

Fig4and5TheoryData_K_100_1000.mat [1MB] 24 Fig4and5TheoryData_K_100_1000.mat [1MB] 25 Fig4and5TheoryData_K_100_1000.mat [1MB] 26 Security: Anyone File name: Fig4and5TheoryData_K_100_1000.mat27 Content type: Data License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 1MB

SimulationData.zip [660MB] 28 SimulationData.zip [660MB] 29 SimulationData.zip [660MB] 30 Security: Anyone File name: SimulationData.zip31 Content type: Data Mime-Type: application/zip License: Creative Commons Attribution 4.0 International (CC BY 4.0) File size: 660MB

Program

FinalFigure1.m [6kB] 32 FinalFigure1.m [6kB] 33 FinalFigure1.m [6kB] 34 Security: Anyone File name: FinalFigure1.m35 Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 6kB

FinalFigure2.m [16kB] 36 FinalFigure2.m [16kB] 37 FinalFigure2.m [16kB] 38 Security: Anyone File name: FinalFigure2.m39 Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 16kB

FinalFigure3.m [17kB] 40 FinalFigure3.m [17kB] 41 FinalFigure3.m [17kB] 42 Security: Anyone File name: FinalFigure3.m43 Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 17kB

FinalFigure4.m [42kB] 44 FinalFigure4.m [42kB] 45 FinalFigure4.m [42kB] 46 Security: Anyone File name: FinalFigure4.m47 Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 42kB

FinalFigure5.m [39kB] 48 FinalFigure5.m [39kB] 49 FinalFigure5.m [39kB] 50 Security: Anyone File name: FinalFigure5.m51 Content type: Program Mime-Type: application/vnd.wolfram.mathematica.package License: MIT License File size: 39kB

fixation_properties.py [1kB] 52 fixation_properties.py [1kB] 53 fixation_properties.py [1kB] 54 Security: Anyone File name: fixation_properties.py55 Content type: Program License: MIT License File size: 1kB

heatmap.py [1kB] 56 heatmap.py [1kB] 57 heatmap.py [1kB] 58 Security: Anyone File name: heatmap.py59 Content type: Program License: MIT License File size: 1kB

next_reaction_method.py [22kB] 60 next_reaction_method.py [22kB] 61 next_reaction_method.py [22kB] 62 Security: Anyone File name: next_reaction_method.py63 Content type: Program License: MIT License File size: 22kB

trajectories.py [984B] 64 trajectories.py [984B] 65 trajectories.py [984B] 66 Security: Anyone File name: trajectories.py67 Content type: Program License: MIT License File size: 984B

• 1. https://doi.org/10.5518/1462
• 2. https://archive.researchdata.leeds.ac.uk/view/subjects/G120.html
• 3. https://archive.researchdata.leeds.ac.uk/view/divisions/DAM/
• 4. https://arxiv.org/html/2312.14826v1
• 5. https://doi.org/10.1088/1751-8121/ad4ad6
• 6. https://eprints.whiterose.ac.uk/213447/
• 7. https://archive.researchdata.leeds.ac.uk/id/eprint/1209
• 8. https://orcid.org/0000-0002-7272-7597
• 9. https://orcid.org/0009-0003-5548-5535
• 10. https://orcid.org/0000-0002-1424-567X
• 11. mailto:mmmwa@leeds.ac.uk
• 12. https://archive.researchdata.leeds.ac.uk/1209/2/README_Hernandez-Navarro_Asker_Mobilia_2023.txt
• 13. https://archive.researchdata.leeds.ac.uk/1209/2/README_Hernandez-Navarro_Asker_Mobilia_2023.txt
• 14. https://archive.researchdata.leeds.ac.uk/1209/2/README_Hernandez-Navarro_Asker_Mobilia_2023.txt
• 15. https://archive.researchdata.leeds.ac.uk/1209/2/README_Hernandez-Navarro_Asker_Mobilia_2023.txt
• 16. https://archive.researchdata.leeds.ac.uk/1209/1/all_data.zip
• 17. https://archive.researchdata.leeds.ac.uk/1209/1/all_data.zip
• 18. https://archive.researchdata.leeds.ac.uk/1209/1/all_data.zip
• 19. https://archive.researchdata.leeds.ac.uk/1209/1/all_data.zip
• 20. https://archive.researchdata.leeds.ac.uk/1209/3/Fig2TheoryData_200to25.mat
• 21. https://archive.researchdata.leeds.ac.uk/1209/3/Fig2TheoryData_200to25.mat
• 22. https://archive.researchdata.leeds.ac.uk/1209/3/Fig2TheoryData_200to25.mat
• 23. https://archive.researchdata.leeds.ac.uk/1209/3/Fig2TheoryData_200to25.mat
• 24. https://archive.researchdata.leeds.ac.uk/1209/4/Fig4and5TheoryData_K_100_1000.mat
• 25. https://archive.researchdata.leeds.ac.uk/1209/4/Fig4and5TheoryData_K_100_1000.mat
• 26. https://archive.researchdata.leeds.ac.uk/1209/4/Fig4and5TheoryData_K_100_1000.mat
• 27. https://archive.researchdata.leeds.ac.uk/1209/4/Fig4and5TheoryData_K_100_1000.mat
• 28. https://archive.researchdata.leeds.ac.uk/1209/13/SimulationData.zip
• 29. https://archive.researchdata.leeds.ac.uk/1209/13/SimulationData.zip
• 30. https://archive.researchdata.leeds.ac.uk/1209/13/SimulationData.zip
• 31. https://archive.researchdata.leeds.ac.uk/1209/13/SimulationData.zip
• 32. https://archive.researchdata.leeds.ac.uk/1209/5/FinalFigure1.m
• 33. https://archive.researchdata.leeds.ac.uk/1209/5/FinalFigure1.m
• 34. https://archive.researchdata.leeds.ac.uk/1209/5/FinalFigure1.m
• 35. https://archive.researchdata.leeds.ac.uk/1209/5/FinalFigure1.m
• 36. https://archive.researchdata.leeds.ac.uk/1209/6/FinalFigure2.m
• 37. https://archive.researchdata.leeds.ac.uk/1209/6/FinalFigure2.m
• 38. https://archive.researchdata.leeds.ac.uk/1209/6/FinalFigure2.m
• 39. https://archive.researchdata.leeds.ac.uk/1209/6/FinalFigure2.m
• 40. https://archive.researchdata.leeds.ac.uk/1209/7/FinalFigure3.m
• 41. https://archive.researchdata.leeds.ac.uk/1209/7/FinalFigure3.m
• 42. https://archive.researchdata.leeds.ac.uk/1209/7/FinalFigure3.m
• 43. https://archive.researchdata.leeds.ac.uk/1209/7/FinalFigure3.m
• 44. https://archive.researchdata.leeds.ac.uk/1209/8/FinalFigure4.m
• 45. https://archive.researchdata.leeds.ac.uk/1209/8/FinalFigure4.m
• 46. https://archive.researchdata.leeds.ac.uk/1209/8/FinalFigure4.m
• 47. https://archive.researchdata.leeds.ac.uk/1209/8/FinalFigure4.m
• 48. https://archive.researchdata.leeds.ac.uk/1209/9/FinalFigure5.m
• 49. https://archive.researchdata.leeds.ac.uk/1209/9/FinalFigure5.m
• 50. https://archive.researchdata.leeds.ac.uk/1209/9/FinalFigure5.m
• 51. https://archive.researchdata.leeds.ac.uk/1209/9/FinalFigure5.m
• 52. https://archive.researchdata.leeds.ac.uk/1209/10/fixation_properties.py
• 53. https://archive.researchdata.leeds.ac.uk/1209/10/fixation_properties.py
• 54. https://archive.researchdata.leeds.ac.uk/1209/10/fixation_properties.py
• 55. https://archive.researchdata.leeds.ac.uk/1209/10/fixation_properties.py
• 56. https://archive.researchdata.leeds.ac.uk/1209/11/heatmap.py
• 57. https://archive.researchdata.leeds.ac.uk/1209/11/heatmap.py
• 58. https://archive.researchdata.leeds.ac.uk/1209/11/heatmap.py
• 59. https://archive.researchdata.leeds.ac.uk/1209/11/heatmap.py
• 60. https://archive.researchdata.leeds.ac.uk/1209/12/next_reaction_method.py
• 61. https://archive.researchdata.leeds.ac.uk/1209/12/next_reaction_method.py
• 62. https://archive.researchdata.leeds.ac.uk/1209/12/next_reaction_method.py
• 63. https://archive.researchdata.leeds.ac.uk/1209/12/next_reaction_method.py
• 64. https://archive.researchdata.leeds.ac.uk/1209/15/trajectories.py
• 65. https://archive.researchdata.leeds.ac.uk/1209/15/trajectories.py
• 66. https://archive.researchdata.leeds.ac.uk/1209/15/trajectories.py
• 67. https://archive.researchdata.leeds.ac.uk/1209/15/trajectories.py