This dataset contains data pertinent to the development and validation of the Mini Gut (MiGut) model. Below is an outline of the data contained in each of the files Created by William Davis Birch For further information contact Nik Kapur (N.Kapur@leeds.ac.uk) University of Leeds 2022 --------------------------------------------------------------- FILE: bray_curtis_dissimilarity_data.xlsx DESCRIPTION: This file contains the Bray-Curtis dissimilarity matrices for each of the reactors and vessels throughout the study. The values range from 0% (no similarity) to 100% (ide- ntical). STRUCTURE: Data is divided according to vessel (1 to 3) which is indicated by the sheet name. Then, each sheet contains four matrices: one for each of the MiGut reactors (1 to 3) and one for the Human Gut Model (HGM). This is noted in the top-left hand conrner of each matrix. The data within the matrix is further divided by the stage of the experiment (Settling, Amox, Cipro, Pip/tazo, PA1, PA2, PA3, PA4). Each value in the matrix corresponds to the Bray-Curtis dissim- ilarity between the corresponding row and column. EXAMPLE; sheet "Vessel 3", matrix "MiGut reactor 1", the Bray- Curtis dissimilarity between days 15 and 6 is 4.89% (cell E9) --------------------------------------------------------------- FILE: "NMDS_input_data.xlsx" DESCRIPTION: This file contains the processed bacterial quant- ifications for the 9 reported populations. All values reported are in log10copies/uL. STRUCTURE: The sample day, stage of the experiment, model ID (used for processing in R), system (MiGut or HGM), and vessel for each row of data are indicated in the corresponding columns. EXAMPLE: The concentration of Enterobacteriaceae on day 41 of the study (stage PA1), in model 4b, Vessel 1 is 9.797067775 (cell I20)